PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0003s0377.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family C3H
Protein Properties Length: 446aa    MW: 49483.5 Da    PI: 7.7506
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0003s0377.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.57.3e-061811951226
                           TS--TTTTT-SS-SS CS
               zf-CCCH  12 tGtCkyGdrCkFaHg 26 
                           +G C+y +rC++aHg
  Sphfalx0003s0377.1.p 181 NGGCPYAARCRYAHG 195
                           499***********9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.105.6E-11168199IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.028170197IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MLCRTLEDKP VVRWVKTVIW PPGRHYAHVE FNSESAANAI MDAYIEQTAE FCLNDAAFCM  60
FRHQKYLRPG AVYETTNHVV LNLNFTVQVN QEKKSTKNLS LGSQSSEQCL DALELDGEEG  120
DESLDESVQP VRIELKPDEM AAAVHALPAL IKGVNQDTEQ GNVGGWSNHL YKTRLSNKFN  180
NGGCPYAARC RYAHGVEELL RPAPPQMPHA QGRRSAVTPP LGSSSSTGLT TDFMGRQDTS  240
DTGDEYVDPK SVICVRGIAD GLTSFSFKGA MNELFERTLR TTGVLEFGKY AVRHSQFKDN  300
SKQALVTFLN VEAPTAILSV VKPLKIAGQS LVILPWSNIQ EQKLQPLPKV NAGQPGFQPT  360
STVRRMLVNL VLLPRLVCFR CHSYLPKVSQ TLADLPCQVA PYAIQALVLT MESGHHHHGH  420
QVLQFHLYTI FTRWRWVASI TLCLG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.13e-06C3H family protein